Western Blot:Article Title: TRIM16 mediates secretory autophagy in head and neck cancer-associated fibroblasts
Article Snippet: ACTA2/αSMA , Cell Signaling Technology 19,245 , IHC, 1:300. .. AKT1 , Cell Signaling Technology, 2920S , WB, 1:2000. .. pan-actin , Cell Signaling Technology 41,185 , WB, 1:5000.
Article Title: PFKFB2 Is Pivotal for Metabolic Flexibility and Differential Glucose Utilization
Article Snippet: .. Antibodies Used for Western Blot Analysis Antibody against Producer/product number Primary dilution Secondary dilution Akt Cell Signaling Technology (CST): 2920S 1:1000 1:3000 Phospho- Akt (serine 473) CST: 4060S 1:1000 1:3000 GFAT1 CST: 5322S 1:500 1:2000 OGA/MGEA5 Proteintech:14711- 1- AP 1:1000 1:3000 OGT Sigma: O6264 1:1000 1:3000 O- linked N- acetylglucosamine Rabbit mAb CST: 82332S 1:1000 1:3000 RL2 Novus: NB300- 524 1:500 (WB) 1:1000 (immunoprecipitation) 1:2000 (WB) 1:3000 (immunoprecipitation) PDH CST: 3205S 1:1000 1:3000 Phospho- PDH (serine 293) CST:31866S 1:1000 1:3000 PDK1 Enzo Life Sciences: ADI- KAP- PK112 1:250 1:2000 PDK2 Santa Cruz: sc- 100 534 1:500 1:2000 PDK4 Biosynthesis, Inc.19 1:750 1:3000 Sp1 Sigma: 07–645 1:1000 1:3000 Akt indicates protein kinase B; GFAT1, glutamine fructose 6- phosphate amidotransferase; OGA, O- GlcNAcase; OGT, O- GlcNAc transferase; PDH, pyruvate dehydrogenase; PDK, pyruvate dehydrogenase kinase; Sp1, specificity protein 1; and WB, western blot. ..
Article Title: Loss of Cardiac PFKFB2 Drives Metabolic, Functional, and Electrophysiological Remodeling in the Heart
Article Snippet: .. Antibodies Used for Western Blot Analysis Antibody Company/product number Primary dilution Secondary dilution Acetyl- CoA carboxylase (ACC) CST: 3676S 1:1000 1:2000 Phospho- ACC (Ser79) CST:3661S 1:1000 1:2000 Protein kinase B (Akt) CST: 2920S 1:1000 1:3000 Phospho- Akt (Ser473) CST: 4060S 1:1000 1:3000 AMP- activated protein kinase β1/2 (AMPKβ1/2) CST: 4150P 1:1000 1:5000 Phospho- AMPKβ1 (Ser108) CST: 4181P 1:1000 1:3000 Cytochrome c Bio- Synthesis40 1:1000 1:2000 Mitochondrial pyruvate carrier 2 (MPC2) CST: 46141S 1:1000 1:3000 O- linked N- acetylglucosamine CST:82332S 1:1000 1:2500 Phospho- PFKFB2 (Ser 483) CST: 13064S 1:1000 1:3000 Pyruvate dehydrogenase (PDH) CST: 3205S 1:1000 1:2000 Phospho- PDH (Ser293) CST:31866S 1:1000 1:2000 Translocase of the outer mitochondrial membrane (TOM20) CST: 42406S 1:1000 1:3000 CST indicates Cell Signaling Technology. ..
Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: Actin (AC-15), NB600-501, Novus Biologicals (https://www.novusbio.com/products/beta-actin-antibody-ac-15_nb600-501) Dab2 (p96), 610465, BD Transduction Laboratories (https://www.bdbiosciences.com/en-au/products/reagents/microscopy-imagingreagents/immunofluorescence-reagents/purified-mouse-anti-disabled-2-p96.610465) Dab2 (EP2297Y), ab76253, Abcam (https://www.abcam.com/products/primary-antibodies/dab2-antibody-ep2297y-ab76253.html) Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam (https://www.abcam.com/en-tw/products/ primary-antibodies/rabbit-igg-monoclonal-epr25a-isotype-control-ab172730) HA-Tag (6E2), 2367S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/ha-tag-6e2-mouse-mab/2367) p-AKT (Ser473), AP0637, ABclonal (https://abclonal.com/catalog-antibodies/Phospho-Akt1-S473mAb/AP0637) AKT (pan) (C67E7), 4691X, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-c67e7-rabbit-mab/4691) AKT (pan) (40D4), 2920S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-40d4-mouse-mab/2920) p-mTOR (Ser2481), 2974S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-mtor-ser2481antibody/2974) Total mTOR, 2972S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/mtor-antibody/2972) p-PLD1 (Thr147), 3831S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-pld1-thr147antibody/3831) Total PLD1, 3832, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/pld1-antibody/3832) GST (B-14), sc-138, Santa Cruz Biotechnology (https://www.scbt.com/p/gst-antibody-b-14) Antibodies for flow cytometry: PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience (https://www.thermofisher.com/antibody/product/ CD62P-P-Selectin-Antibody-clone-Psel-KO2-3-Monoclonal/12-0626-82) PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience (https://www.thermofisher.com/antibody/ product/Mouse-IgG1-kappa-clone-P3-6-2-8-1-Monoclonal/12-4714-82) Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen (https://www.thermofisher.com/order/catalog/product/F13191) FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. (https://www.caymanchem.com/product/10012559/ 4 n atu re p o rtfo lio | rep o rtin g su m m ary A pril2023 Animals and other research organisms Policy information about studies involving animals; ARRIVE guidelines recommended for reporting animal research, and Sex and Gender in Research Laboratory animals Wild animals Reporting on sex Field-collected samples Ethics oversight Note that full information on the approval of the study protocol must also be provided in the manuscript. ..
Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: (Antibody, Clone number (if applicable), Cat no, Supplier) Actin (AC-15), NB600-501, Novus Biologicals Dab2 (p96), 610465, BD Transduction Laboratories Dab2 (EP2297Y), ab76253, Abcam Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam HA-Tag (6E2), 2367S, Cell Signaling p-AKT (Ser473), AP0637, ABclonal AKT (pan) (C67E7), 4691X, Cell Signaling AKT (pan) (40D4), 2920S, Cell Signaling p-mTOR (Ser2481), 2974S, Cell Signaling Total mTOR, 2972S, Cell Signaling p-PLD1 (Thr147), 3831S, Cell Signaling Total PLD1, 3832, Cell Signaling GST (B-14), sc-138, Santa Cruz Biotechnology Antibodies for flow cytometry: (Antibody, Clone number (if applicable), Cat no, Supplier) PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. FITC-conjugated Normal Rabbit IgG, 10010322, Cayman Chemicals Co. All antibodies used in this study are commercially available and were validated by the manufacturer. ..
Immunoprecipitation:Article Title: PFKFB2 Is Pivotal for Metabolic Flexibility and Differential Glucose Utilization
Article Snippet: .. Antibodies Used for Western Blot Analysis Antibody against Producer/product number Primary dilution Secondary dilution Akt Cell Signaling Technology (CST): 2920S 1:1000 1:3000 Phospho- Akt (serine 473) CST: 4060S 1:1000 1:3000 GFAT1 CST: 5322S 1:500 1:2000 OGA/MGEA5 Proteintech:14711- 1- AP 1:1000 1:3000 OGT Sigma: O6264 1:1000 1:3000 O- linked N- acetylglucosamine Rabbit mAb CST: 82332S 1:1000 1:3000 RL2 Novus: NB300- 524 1:500 (WB) 1:1000 (immunoprecipitation) 1:2000 (WB) 1:3000 (immunoprecipitation) PDH CST: 3205S 1:1000 1:3000 Phospho- PDH (serine 293) CST:31866S 1:1000 1:3000 PDK1 Enzo Life Sciences: ADI- KAP- PK112 1:250 1:2000 PDK2 Santa Cruz: sc- 100 534 1:500 1:2000 PDK4 Biosynthesis, Inc.19 1:750 1:3000 Sp1 Sigma: 07–645 1:1000 1:3000 Akt indicates protein kinase B; GFAT1, glutamine fructose 6- phosphate amidotransferase; OGA, O- GlcNAcase; OGT, O- GlcNAc transferase; PDH, pyruvate dehydrogenase; PDK, pyruvate dehydrogenase kinase; Sp1, specificity protein 1; and WB, western blot. ..
Membrane:Article Title: Loss of Cardiac PFKFB2 Drives Metabolic, Functional, and Electrophysiological Remodeling in the Heart
Article Snippet: .. Antibodies Used for Western Blot Analysis Antibody Company/product number Primary dilution Secondary dilution Acetyl- CoA carboxylase (ACC) CST: 3676S 1:1000 1:2000 Phospho- ACC (Ser79) CST:3661S 1:1000 1:2000 Protein kinase B (Akt) CST: 2920S 1:1000 1:3000 Phospho- Akt (Ser473) CST: 4060S 1:1000 1:3000 AMP- activated protein kinase β1/2 (AMPKβ1/2) CST: 4150P 1:1000 1:5000 Phospho- AMPKβ1 (Ser108) CST: 4181P 1:1000 1:3000 Cytochrome c Bio- Synthesis40 1:1000 1:2000 Mitochondrial pyruvate carrier 2 (MPC2) CST: 46141S 1:1000 1:3000 O- linked N- acetylglucosamine CST:82332S 1:1000 1:2500 Phospho- PFKFB2 (Ser 483) CST: 13064S 1:1000 1:3000 Pyruvate dehydrogenase (PDH) CST: 3205S 1:1000 1:2000 Phospho- PDH (Ser293) CST:31866S 1:1000 1:2000 Translocase of the outer mitochondrial membrane (TOM20) CST: 42406S 1:1000 1:3000 CST indicates Cell Signaling Technology. ..
Recombinant:Article Title: Hippocampal astrocytes induce sex-dimorphic effects on memory.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse anti-HA Biolegend Cat # 901513; RRID: AB_2565335 Rabbit anti-HA Cell Signaling Cat # 3724S; RRID: AB_1549585 Rabbit anti-GFAP MilliporeSigma Cat # G9269; RRID: AB_477035 Mouse anti-GFAP MilliporeSigma Cat # MAB3402B; RRID: AB_10917109 Goat anti-GFAP Abcam Cat # ab53554; RRID: AB_880202 Chicken anti-GFAP Abcam Cat # ab4674; RRID: AB_304558 Rabbit anti-mGluR3 Abcam Cat # ab166608; RRID: AB_2833092 Chicken anti-GFP Abcam Cat # ab13970; RRID: AB_300798 Rabbit anti-NeuN MilliporeSigma Cat # ABN78; RRID: AB_10807945 Guinea pig anti-NeuN MilliporeSigma Cat # ABN90; RRID: AB_11205592 Goat anti-Iba1 Abcam Cat # ab5076; RRID: AB_222402 Rabbit anti-phospho-CREB (S133) Cell Signaling Cat # 9198; RRID: AB_2561044 Mouse anti-total-CREB Cell Signaling Cat # 9104S; RRID: AB_490881 Rabbit anti-phospho-Akt (Ser473) Abcam Cat # ab81283; RRID: AB_2224551 Mouse anti-total-Akt Cell Signaling Cat # 2920S; RRID: AB_1147620 Mouse anti-g-tubulin MilliporeSigma Cat # T5326; RRID: AB_532292 Mouse anti-c-Fos Abcam Cat # ab208942; RRID: AB_2747772 Bacterial and viral strains AAV2/PHP.eB-U6-sgRNA552 In paper N/A AAV2/PHP.eB-U6-sgRNA703 In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-mGluR3 In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-hM4Di In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-rM3Ds In paper N/A Chemicals, peptides, and recombinant proteins Clozapine-N-oxide Tocris Cat # 4936 LY354740 Tocris Cat # 3246 2,2,2-tribromoethanol Fisher Scientific Cat # AC421430100 40,6-Diamidino-2-phenylindole dihydrochloride (DAPI) MilliporeSigma Cat # D9542 Tamoxifen (TAM) MilliporeSigma Cat # T5648 Critical commercial assays Platinum SuperFi DNA Polymerase kit ThermoFisher Cat #12351010 Plasmid Plus Maxi Prep kit Qiagen Cat # 12963 RNeasy Mini Kit with DNase Qiagen Cat # 74106; # 79256 Protoscript First Strand Synthesis Kit New England Biolabs Cat # 6300L Experimental models: Cell lines NEB 5-alpha competent bacteria New England Biolabs Cat # C2987H Experimental models: Organisms/strains Aldh1l1-CreERT2 mice (12–14 months of age) Jackson Laboratory Strain 031008 Rosa26-LSL-Cas9 mice (used in crossing lines; up to 12 months of age) Jackson Laboratory Strain 026556 (Continued on next page) 14 Cell Reports 43, 114278, June 25, 2024 .. REAGENT or RESOURCE SOURCE IDENTIFIER Aldh1l1-Cre mice (4–7 months of age) Jackson Laboratory Strain 023748 Aldh1l1-CreERT2 x Rosa26-LSL-Cas9 (Aldh1l1-Cas9) mice; 5–7 months of age) This paper N/A Wild-type C57BL/6J mice (up to 12 months of age) Jackson Laboratory Strain 000664 Oligonucleotides #552 forward, CACCGCAGAGGTATCCAACGCCTGG This paper N/A #552 reverse, AAACCCAGGCGTTGGATACCTCTGC This paper N/A #703 forward, CCGCAGAGCATCGTTGACTAAAG This paper N/A #703 reverse, AACCTTTAGTCAACGATGCTCTGC This paper N/A See Table S4 for RT-qPCR primer sequences This paper N/A Recombinant DNA pAAV-U6-sgRNA-hSyn-mCherry vector Addgene; Hung et al.103 Addgene #87916; RRID: Addgene 87916 pAAV-GFAP-EGFP Addgene Addgene #50473; RRID: Addgene_50473 pAAV-EF1a-DIO-hM4D(Gi)-mCherry Addgene Addgene #50461; RRID: Addgene_50461 pCRII-TOPO CMV-cGFP-bGH Poly(A) Addgene; Wilusz et al.104 Addgene #46835; RRID: Addgene_46835 pAAV-GFAP-HA-hM4D(Gi)-IRES-mCitrine Addgene Addgene #50471; RRID: Addgene_50471 pAAV-GFAP-HA-rM3D(Gs)-IRES-mCitrine Addgene Addgene #50472; RRID: Addgene_50472 Software and algorithms Ethovision XT (version 12.0.1138) Noldus N/A R Studio (version 4.0.3) N/A Rtrack package (version 1.0.0) Overall et al.40 https://rupertoverall.net/Rtrack/ GraphPad Prism (version 8 or above) N/A BZ-X Analyzer Software Keyence N/A ImageJ (FIJI) N/A
Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: Actin (AC-15), NB600-501, Novus Biologicals (https://www.novusbio.com/products/beta-actin-antibody-ac-15_nb600-501) Dab2 (p96), 610465, BD Transduction Laboratories (https://www.bdbiosciences.com/en-au/products/reagents/microscopy-imagingreagents/immunofluorescence-reagents/purified-mouse-anti-disabled-2-p96.610465) Dab2 (EP2297Y), ab76253, Abcam (https://www.abcam.com/products/primary-antibodies/dab2-antibody-ep2297y-ab76253.html) Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam (https://www.abcam.com/en-tw/products/ primary-antibodies/rabbit-igg-monoclonal-epr25a-isotype-control-ab172730) HA-Tag (6E2), 2367S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/ha-tag-6e2-mouse-mab/2367) p-AKT (Ser473), AP0637, ABclonal (https://abclonal.com/catalog-antibodies/Phospho-Akt1-S473mAb/AP0637) AKT (pan) (C67E7), 4691X, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-c67e7-rabbit-mab/4691) AKT (pan) (40D4), 2920S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-40d4-mouse-mab/2920) p-mTOR (Ser2481), 2974S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-mtor-ser2481antibody/2974) Total mTOR, 2972S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/mtor-antibody/2972) p-PLD1 (Thr147), 3831S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-pld1-thr147antibody/3831) Total PLD1, 3832, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/pld1-antibody/3832) GST (B-14), sc-138, Santa Cruz Biotechnology (https://www.scbt.com/p/gst-antibody-b-14) Antibodies for flow cytometry: PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience (https://www.thermofisher.com/antibody/product/ CD62P-P-Selectin-Antibody-clone-Psel-KO2-3-Monoclonal/12-0626-82) PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience (https://www.thermofisher.com/antibody/ product/Mouse-IgG1-kappa-clone-P3-6-2-8-1-Monoclonal/12-4714-82) Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen (https://www.thermofisher.com/order/catalog/product/F13191) FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. (https://www.caymanchem.com/product/10012559/ 4 n atu re p o rtfo lio | rep o rtin g su m m ary A pril2023 Animals and other research organisms Policy information about studies involving animals; ARRIVE guidelines recommended for reporting animal research, and Sex and Gender in Research Laboratory animals Wild animals Reporting on sex Field-collected samples Ethics oversight Note that full information on the approval of the study protocol must also be provided in the manuscript. ..
Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: (Antibody, Clone number (if applicable), Cat no, Supplier) Actin (AC-15), NB600-501, Novus Biologicals Dab2 (p96), 610465, BD Transduction Laboratories Dab2 (EP2297Y), ab76253, Abcam Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam HA-Tag (6E2), 2367S, Cell Signaling p-AKT (Ser473), AP0637, ABclonal AKT (pan) (C67E7), 4691X, Cell Signaling AKT (pan) (40D4), 2920S, Cell Signaling p-mTOR (Ser2481), 2974S, Cell Signaling Total mTOR, 2972S, Cell Signaling p-PLD1 (Thr147), 3831S, Cell Signaling Total PLD1, 3832, Cell Signaling GST (B-14), sc-138, Santa Cruz Biotechnology Antibodies for flow cytometry: (Antibody, Clone number (if applicable), Cat no, Supplier) PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. FITC-conjugated Normal Rabbit IgG, 10010322, Cayman Chemicals Co. All antibodies used in this study are commercially available and were validated by the manufacturer. ..
Plasmid Preparation:Article Title: Hippocampal astrocytes induce sex-dimorphic effects on memory.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse anti-HA Biolegend Cat # 901513; RRID: AB_2565335 Rabbit anti-HA Cell Signaling Cat # 3724S; RRID: AB_1549585 Rabbit anti-GFAP MilliporeSigma Cat # G9269; RRID: AB_477035 Mouse anti-GFAP MilliporeSigma Cat # MAB3402B; RRID: AB_10917109 Goat anti-GFAP Abcam Cat # ab53554; RRID: AB_880202 Chicken anti-GFAP Abcam Cat # ab4674; RRID: AB_304558 Rabbit anti-mGluR3 Abcam Cat # ab166608; RRID: AB_2833092 Chicken anti-GFP Abcam Cat # ab13970; RRID: AB_300798 Rabbit anti-NeuN MilliporeSigma Cat # ABN78; RRID: AB_10807945 Guinea pig anti-NeuN MilliporeSigma Cat # ABN90; RRID: AB_11205592 Goat anti-Iba1 Abcam Cat # ab5076; RRID: AB_222402 Rabbit anti-phospho-CREB (S133) Cell Signaling Cat # 9198; RRID: AB_2561044 Mouse anti-total-CREB Cell Signaling Cat # 9104S; RRID: AB_490881 Rabbit anti-phospho-Akt (Ser473) Abcam Cat # ab81283; RRID: AB_2224551 Mouse anti-total-Akt Cell Signaling Cat # 2920S; RRID: AB_1147620 Mouse anti-g-tubulin MilliporeSigma Cat # T5326; RRID: AB_532292 Mouse anti-c-Fos Abcam Cat # ab208942; RRID: AB_2747772 Bacterial and viral strains AAV2/PHP.eB-U6-sgRNA552 In paper N/A AAV2/PHP.eB-U6-sgRNA703 In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-mGluR3 In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-hM4Di In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-rM3Ds In paper N/A Chemicals, peptides, and recombinant proteins Clozapine-N-oxide Tocris Cat # 4936 LY354740 Tocris Cat # 3246 2,2,2-tribromoethanol Fisher Scientific Cat # AC421430100 40,6-Diamidino-2-phenylindole dihydrochloride (DAPI) MilliporeSigma Cat # D9542 Tamoxifen (TAM) MilliporeSigma Cat # T5648 Critical commercial assays Platinum SuperFi DNA Polymerase kit ThermoFisher Cat #12351010 Plasmid Plus Maxi Prep kit Qiagen Cat # 12963 RNeasy Mini Kit with DNase Qiagen Cat # 74106; # 79256 Protoscript First Strand Synthesis Kit New England Biolabs Cat # 6300L Experimental models: Cell lines NEB 5-alpha competent bacteria New England Biolabs Cat # C2987H Experimental models: Organisms/strains Aldh1l1-CreERT2 mice (12–14 months of age) Jackson Laboratory Strain 031008 Rosa26-LSL-Cas9 mice (used in crossing lines; up to 12 months of age) Jackson Laboratory Strain 026556 (Continued on next page) 14 Cell Reports 43, 114278, June 25, 2024 .. REAGENT or RESOURCE SOURCE IDENTIFIER Aldh1l1-Cre mice (4–7 months of age) Jackson Laboratory Strain 023748 Aldh1l1-CreERT2 x Rosa26-LSL-Cas9 (Aldh1l1-Cas9) mice; 5–7 months of age) This paper N/A Wild-type C57BL/6J mice (up to 12 months of age) Jackson Laboratory Strain 000664 Oligonucleotides #552 forward, CACCGCAGAGGTATCCAACGCCTGG This paper N/A #552 reverse, AAACCCAGGCGTTGGATACCTCTGC This paper N/A #703 forward, CCGCAGAGCATCGTTGACTAAAG This paper N/A #703 reverse, AACCTTTAGTCAACGATGCTCTGC This paper N/A See Table S4 for RT-qPCR primer sequences This paper N/A Recombinant DNA pAAV-U6-sgRNA-hSyn-mCherry vector Addgene; Hung et al.103 Addgene #87916; RRID: Addgene 87916 pAAV-GFAP-EGFP Addgene Addgene #50473; RRID: Addgene_50473 pAAV-EF1a-DIO-hM4D(Gi)-mCherry Addgene Addgene #50461; RRID: Addgene_50461 pCRII-TOPO CMV-cGFP-bGH Poly(A) Addgene; Wilusz et al.104 Addgene #46835; RRID: Addgene_46835 pAAV-GFAP-HA-hM4D(Gi)-IRES-mCitrine Addgene Addgene #50471; RRID: Addgene_50471 pAAV-GFAP-HA-rM3D(Gs)-IRES-mCitrine Addgene Addgene #50472; RRID: Addgene_50472 Software and algorithms Ethovision XT (version 12.0.1138) Noldus N/A R Studio (version 4.0.3) N/A Rtrack package (version 1.0.0) Overall et al.40 https://rupertoverall.net/Rtrack/ GraphPad Prism (version 8 or above) N/A BZ-X Analyzer Software Keyence N/A ImageJ (FIJI) N/A
Bacteria:Article Title: Hippocampal astrocytes induce sex-dimorphic effects on memory.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse anti-HA Biolegend Cat # 901513; RRID: AB_2565335 Rabbit anti-HA Cell Signaling Cat # 3724S; RRID: AB_1549585 Rabbit anti-GFAP MilliporeSigma Cat # G9269; RRID: AB_477035 Mouse anti-GFAP MilliporeSigma Cat # MAB3402B; RRID: AB_10917109 Goat anti-GFAP Abcam Cat # ab53554; RRID: AB_880202 Chicken anti-GFAP Abcam Cat # ab4674; RRID: AB_304558 Rabbit anti-mGluR3 Abcam Cat # ab166608; RRID: AB_2833092 Chicken anti-GFP Abcam Cat # ab13970; RRID: AB_300798 Rabbit anti-NeuN MilliporeSigma Cat # ABN78; RRID: AB_10807945 Guinea pig anti-NeuN MilliporeSigma Cat # ABN90; RRID: AB_11205592 Goat anti-Iba1 Abcam Cat # ab5076; RRID: AB_222402 Rabbit anti-phospho-CREB (S133) Cell Signaling Cat # 9198; RRID: AB_2561044 Mouse anti-total-CREB Cell Signaling Cat # 9104S; RRID: AB_490881 Rabbit anti-phospho-Akt (Ser473) Abcam Cat # ab81283; RRID: AB_2224551 Mouse anti-total-Akt Cell Signaling Cat # 2920S; RRID: AB_1147620 Mouse anti-g-tubulin MilliporeSigma Cat # T5326; RRID: AB_532292 Mouse anti-c-Fos Abcam Cat # ab208942; RRID: AB_2747772 Bacterial and viral strains AAV2/PHP.eB-U6-sgRNA552 In paper N/A AAV2/PHP.eB-U6-sgRNA703 In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-mGluR3 In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-hM4Di In paper N/A AAV2/PHP.eB-hGfaABC1D-DIO-HA-rM3Ds In paper N/A Chemicals, peptides, and recombinant proteins Clozapine-N-oxide Tocris Cat # 4936 LY354740 Tocris Cat # 3246 2,2,2-tribromoethanol Fisher Scientific Cat # AC421430100 40,6-Diamidino-2-phenylindole dihydrochloride (DAPI) MilliporeSigma Cat # D9542 Tamoxifen (TAM) MilliporeSigma Cat # T5648 Critical commercial assays Platinum SuperFi DNA Polymerase kit ThermoFisher Cat #12351010 Plasmid Plus Maxi Prep kit Qiagen Cat # 12963 RNeasy Mini Kit with DNase Qiagen Cat # 74106; # 79256 Protoscript First Strand Synthesis Kit New England Biolabs Cat # 6300L Experimental models: Cell lines NEB 5-alpha competent bacteria New England Biolabs Cat # C2987H Experimental models: Organisms/strains Aldh1l1-CreERT2 mice (12–14 months of age) Jackson Laboratory Strain 031008 Rosa26-LSL-Cas9 mice (used in crossing lines; up to 12 months of age) Jackson Laboratory Strain 026556 (Continued on next page) 14 Cell Reports 43, 114278, June 25, 2024 .. REAGENT or RESOURCE SOURCE IDENTIFIER Aldh1l1-Cre mice (4–7 months of age) Jackson Laboratory Strain 023748 Aldh1l1-CreERT2 x Rosa26-LSL-Cas9 (Aldh1l1-Cas9) mice; 5–7 months of age) This paper N/A Wild-type C57BL/6J mice (up to 12 months of age) Jackson Laboratory Strain 000664 Oligonucleotides #552 forward, CACCGCAGAGGTATCCAACGCCTGG This paper N/A #552 reverse, AAACCCAGGCGTTGGATACCTCTGC This paper N/A #703 forward, CCGCAGAGCATCGTTGACTAAAG This paper N/A #703 reverse, AACCTTTAGTCAACGATGCTCTGC This paper N/A See Table S4 for RT-qPCR primer sequences This paper N/A Recombinant DNA pAAV-U6-sgRNA-hSyn-mCherry vector Addgene; Hung et al.103 Addgene #87916; RRID: Addgene 87916 pAAV-GFAP-EGFP Addgene Addgene #50473; RRID: Addgene_50473 pAAV-EF1a-DIO-hM4D(Gi)-mCherry Addgene Addgene #50461; RRID: Addgene_50461 pCRII-TOPO CMV-cGFP-bGH Poly(A) Addgene; Wilusz et al.104 Addgene #46835; RRID: Addgene_46835 pAAV-GFAP-HA-hM4D(Gi)-IRES-mCitrine Addgene Addgene #50471; RRID: Addgene_50471 pAAV-GFAP-HA-rM3D(Gs)-IRES-mCitrine Addgene Addgene #50472; RRID: Addgene_50472 Software and algorithms Ethovision XT (version 12.0.1138) Noldus N/A R Studio (version 4.0.3) N/A Rtrack package (version 1.0.0) Overall et al.40 https://rupertoverall.net/Rtrack/ GraphPad Prism (version 8 or above) N/A BZ-X Analyzer Software Keyence N/A ImageJ (FIJI) N/A
other:
Article Title: Aminomethyl Salicylaldehydes Lock onto a Surface Lysine by Forming an Extended Intramolecular Hydrogen Bond Network.
Article Snippet: Modified protein was buffer exchanged into 50 mM HEPES pH 8.0, 50 mM KCl, 1 mM DTT with 10% glycerol and concentrated to 20 mg/mL using a 10K MWCO filter (Millipore Amicon Ultra).
Control:Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: Actin (AC-15), NB600-501, Novus Biologicals (https://www.novusbio.com/products/beta-actin-antibody-ac-15_nb600-501) Dab2 (p96), 610465, BD Transduction Laboratories (https://www.bdbiosciences.com/en-au/products/reagents/microscopy-imagingreagents/immunofluorescence-reagents/purified-mouse-anti-disabled-2-p96.610465) Dab2 (EP2297Y), ab76253, Abcam (https://www.abcam.com/products/primary-antibodies/dab2-antibody-ep2297y-ab76253.html) Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam (https://www.abcam.com/en-tw/products/ primary-antibodies/rabbit-igg-monoclonal-epr25a-isotype-control-ab172730) HA-Tag (6E2), 2367S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/ha-tag-6e2-mouse-mab/2367) p-AKT (Ser473), AP0637, ABclonal (https://abclonal.com/catalog-antibodies/Phospho-Akt1-S473mAb/AP0637) AKT (pan) (C67E7), 4691X, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-c67e7-rabbit-mab/4691) AKT (pan) (40D4), 2920S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-40d4-mouse-mab/2920) p-mTOR (Ser2481), 2974S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-mtor-ser2481antibody/2974) Total mTOR, 2972S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/mtor-antibody/2972) p-PLD1 (Thr147), 3831S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-pld1-thr147antibody/3831) Total PLD1, 3832, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/pld1-antibody/3832) GST (B-14), sc-138, Santa Cruz Biotechnology (https://www.scbt.com/p/gst-antibody-b-14) Antibodies for flow cytometry: PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience (https://www.thermofisher.com/antibody/product/ CD62P-P-Selectin-Antibody-clone-Psel-KO2-3-Monoclonal/12-0626-82) PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience (https://www.thermofisher.com/antibody/ product/Mouse-IgG1-kappa-clone-P3-6-2-8-1-Monoclonal/12-4714-82) Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen (https://www.thermofisher.com/order/catalog/product/F13191) FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. (https://www.caymanchem.com/product/10012559/ 4 n atu re p o rtfo lio | rep o rtin g su m m ary A pril2023 Animals and other research organisms Policy information about studies involving animals; ARRIVE guidelines recommended for reporting animal research, and Sex and Gender in Research Laboratory animals Wild animals Reporting on sex Field-collected samples Ethics oversight Note that full information on the approval of the study protocol must also be provided in the manuscript. ..
Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: (Antibody, Clone number (if applicable), Cat no, Supplier) Actin (AC-15), NB600-501, Novus Biologicals Dab2 (p96), 610465, BD Transduction Laboratories Dab2 (EP2297Y), ab76253, Abcam Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam HA-Tag (6E2), 2367S, Cell Signaling p-AKT (Ser473), AP0637, ABclonal AKT (pan) (C67E7), 4691X, Cell Signaling AKT (pan) (40D4), 2920S, Cell Signaling p-mTOR (Ser2481), 2974S, Cell Signaling Total mTOR, 2972S, Cell Signaling p-PLD1 (Thr147), 3831S, Cell Signaling Total PLD1, 3832, Cell Signaling GST (B-14), sc-138, Santa Cruz Biotechnology Antibodies for flow cytometry: (Antibody, Clone number (if applicable), Cat no, Supplier) PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. FITC-conjugated Normal Rabbit IgG, 10010322, Cayman Chemicals Co. All antibodies used in this study are commercially available and were validated by the manufacturer. ..
Flow Cytometry:Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: Actin (AC-15), NB600-501, Novus Biologicals (https://www.novusbio.com/products/beta-actin-antibody-ac-15_nb600-501) Dab2 (p96), 610465, BD Transduction Laboratories (https://www.bdbiosciences.com/en-au/products/reagents/microscopy-imagingreagents/immunofluorescence-reagents/purified-mouse-anti-disabled-2-p96.610465) Dab2 (EP2297Y), ab76253, Abcam (https://www.abcam.com/products/primary-antibodies/dab2-antibody-ep2297y-ab76253.html) Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam (https://www.abcam.com/en-tw/products/ primary-antibodies/rabbit-igg-monoclonal-epr25a-isotype-control-ab172730) HA-Tag (6E2), 2367S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/ha-tag-6e2-mouse-mab/2367) p-AKT (Ser473), AP0637, ABclonal (https://abclonal.com/catalog-antibodies/Phospho-Akt1-S473mAb/AP0637) AKT (pan) (C67E7), 4691X, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-c67e7-rabbit-mab/4691) AKT (pan) (40D4), 2920S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/akt-pan-40d4-mouse-mab/2920) p-mTOR (Ser2481), 2974S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-mtor-ser2481antibody/2974) Total mTOR, 2972S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/mtor-antibody/2972) p-PLD1 (Thr147), 3831S, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/phospho-pld1-thr147antibody/3831) Total PLD1, 3832, Cell Signaling (https://www.cellsignal.com/products/primary-antibodies/pld1-antibody/3832) GST (B-14), sc-138, Santa Cruz Biotechnology (https://www.scbt.com/p/gst-antibody-b-14) Antibodies for flow cytometry: PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience (https://www.thermofisher.com/antibody/product/ CD62P-P-Selectin-Antibody-clone-Psel-KO2-3-Monoclonal/12-0626-82) PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience (https://www.thermofisher.com/antibody/ product/Mouse-IgG1-kappa-clone-P3-6-2-8-1-Monoclonal/12-4714-82) Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen (https://www.thermofisher.com/order/catalog/product/F13191) FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. (https://www.caymanchem.com/product/10012559/ 4 n atu re p o rtfo lio | rep o rtin g su m m ary A pril2023 Animals and other research organisms Policy information about studies involving animals; ARRIVE guidelines recommended for reporting animal research, and Sex and Gender in Research Laboratory animals Wild animals Reporting on sex Field-collected samples Ethics oversight Note that full information on the approval of the study protocol must also be provided in the manuscript. ..
Article Title: Human Disabled-2 regulates thromboxane A 2 signaling for efficient hemostasis in thrombocytopenia
Article Snippet: .. Antibodies for Western blotting: (Antibody, Clone number (if applicable), Cat no, Supplier) Actin (AC-15), NB600-501, Novus Biologicals Dab2 (p96), 610465, BD Transduction Laboratories Dab2 (EP2297Y), ab76253, Abcam Recombinant Rabbit IgG, monoclonal [EPR25A] - Isotype Control, ab172730, Abcam HA-Tag (6E2), 2367S, Cell Signaling p-AKT (Ser473), AP0637, ABclonal AKT (pan) (C67E7), 4691X, Cell Signaling AKT (pan) (40D4), 2920S, Cell Signaling p-mTOR (Ser2481), 2974S, Cell Signaling Total mTOR, 2972S, Cell Signaling p-PLD1 (Thr147), 3831S, Cell Signaling Total PLD1, 3832, Cell Signaling GST (B-14), sc-138, Santa Cruz Biotechnology Antibodies for flow cytometry: (Antibody, Clone number (if applicable), Cat no, Supplier) PE-conjugated anti-CD62P antibody (Psel.KO2.3), 12-0626-82, eBioscience PE-conjugated mouse IgG1 kappa Isotype Control (P3.6.2.8.1), 12-4714-82, eBioscience Alexa Fluor 488-conjugated fibrinogen, F13191, Invitrogen FITC-conjugated anti-TP receptor antibody, 10012559, Cayman Chemicals Co. FITC-conjugated Normal Rabbit IgG, 10010322, Cayman Chemicals Co. All antibodies used in this study are commercially available and were validated by the manufacturer. ..
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